Package: NanoStringQCPro
Title: Quality metrics and data processing methods for NanoString mRNA
        gene expression data
Version: 1.32.0
Date: 2018-04-10
Author: Dorothee Nickles <nickles.dorothee@gene.com>, Thomas Sandmann
        <sandmann.thomas@gene.com>, Robert Ziman
        <ziman.robert@gene.com>, Richard Bourgon
        <bourgon.richard@gene.com>
Maintainer: Robert Ziman <ziman.robert@gene.com>
Description: NanoStringQCPro provides a set of quality metrics that can
        be used to assess the quality of NanoString mRNA gene
        expression data -- i.e. to identify outlier probes and outlier
        samples. It also provides different background subtraction and
        normalization approaches for this data. It outputs suggestions
        for flagging samples/probes and an easily sharable html quality
        control output.
Depends: R (>= 3.2), methods
Imports: AnnotationDbi (>= 1.26.0), org.Hs.eg.db (>= 2.14.0), Biobase
        (>= 2.24.0), knitr (>= 1.12), NMF (>= 0.20.5), RColorBrewer (>=
        1.0-5), png (>= 0.1-7)
Suggests: roxygen2 (>= 4.0.1), testthat, BiocStyle, knitr, rmarkdown
License: Artistic-2.0
biocViews: Microarray, mRNAMicroarray, Preprocessing, Normalization,
        QualityControl, ReportWriting
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/NanoStringQCPro
git_branch: RELEASE_3_17
git_last_commit: 2529d9b
git_last_commit_date: 2023-04-25
Date/Publication: 2023-05-10
NeedsCompilation: no
Packaged: 2023-05-10 21:39:01 UTC; biocbuild
